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Raw Counts Table (ENSG00000109332.20)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Raw Counts
												MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr4	102794382	102794385	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.102	0.8156	NA	NA	NA	1.0	1.0	2.0	1.0	1.0	1.0
E002	chr4	102794385	102794389	FALSE	LOW_COUNTS_INDEP_FILTER	2.7	0.053	0.235	NA	NA	NA	2.0	5.0	4.0	2.0	1.0	2.0
E003	chr4	102794389	102795975	TRUE	OK	553.4	0.00256	0.1337	0.7255	-0.147	-0.074	617.0	653.0	550.0	559.0	461.0	487.0
E004	chr4	102795975	102796133	TRUE	OK	729.0	0.00395	0.04167	0.5998	-0.231	-0.116	774.0	901.0	780.0	717.0	565.0	642.0
E005	chr4	102796133	102797150	TRUE	OK	10624.8	0.00876	0.2061	0.76	-0.204	-0.102	11263.0	13021.0	10381.0	10223.0	8922.0	10057.0
E006	chr4	102797150	102797234	TRUE	OK	4259.9	0.0011	0.3581	0.8103	0.052	0.026	4524.0	4606.0	4069.0	4284.0	3935.0	4231.0
E007	chr4	102797234	102797246	TRUE	OK	3071.6	0.00129	0.2222	0.7657	0.075	0.038	3292.0	3283.0	2871.0	3078.0	2887.0	3088.0
E008	chr4	102797246	102797251	TRUE	OK	2860.5	0.00118	0.1023	0.7	0.099	0.049	3064.0	3012.0	2659.0	2899.0	2695.0	2902.0
E009	chr4	102797251	102797263	TRUE	OK	2901.5	0.0012	0.1164	0.7132	0.096	0.048	3145.0	3023.0	2702.0	2964.0	2704.0	2941.0
E010	chr4	102797263	102797321	TRUE	OK	4327.9	0.00184	0.1369	0.7276	0.108	0.054	4791.0	4305.0	4123.0	4276.0	4234.0	4355.0
E011	chr4	102797321	102797354	TRUE	OK	3852.0	0.00213	0.4803	0.8494	0.054	0.027	4322.0	3833.0	3785.0	3718.0	3764.0	3790.0
E012	chr4	102797354	102797356	TRUE	OK	3574.4	0.00184	0.6074	0.8905	0.037	0.018	4008.0	3592.0	3532.0	3443.0	3470.0	3491.0
E013	chr4	102797356	102797366	TRUE	OK	3629.8	0.00171	0.6909	0.917	0.027	0.013	4069.0	3667.0	3599.0	3488.0	3504.0	3541.0
E014	chr4	102797366	102797384	TRUE	OK	3647.5	0.00154	0.8127	0.9534	0.015	0.007	4107.0	3713.0	3610.0	3510.0	3486.0	3547.0
E015	chr4	102797384	102797398	TRUE	OK	3711.6	0.00184	0.7903	0.9471	0.018	0.009	4210.0	3725.0	3687.0	3574.0	3546.0	3620.0
E016	chr4	102797398	102797402	TRUE	OK	3538.2	0.00207	0.8374	0.9599	0.014	0.007	4043.0	3533.0	3516.0	3413.0	3385.0	3428.0
E017	chr4	102797402	102797460	TRUE	OK	4295.9	0.00169	0.5586	0.8742	0.040	0.020	4861.0	4264.0	4247.0	4243.0	4046.0	4224.0
E018	chr4	102798927	102798977	FALSE	LOW_COUNTS_INDEP_FILTER	4.5	0.0599	0.5725	NA	NA	NA	4.0	3.0	9.0	2.0	5.0	4.0
E019	chr4	102799406	102799466	TRUE	OK	4013.9	0.0029	0.3729	0.8143	0.080	0.040	4578.0	3806.0	3977.0	4013.0	3824.0	3999.0
E020	chr4	102799466	102799500	TRUE	OK	3225.7	0.00306	0.2007	0.7583	0.120	0.060	3629.0	2983.0	3199.0	3269.0	3070.0	3301.0
E021	chr4	102801453	102801456	TRUE	OK	2911.4	0.00288	0.1364	0.7274	0.136	0.068	3271.0	2696.0	2841.0	2962.0	2794.0	2993.0
E022	chr4	102801456	102801468	TRUE	OK	2896.1	0.00306	0.155	0.7367	0.133	0.067	3268.0	2672.0	2829.0	2957.0	2773.0	2966.0
E023	chr4	102801468	102801472	TRUE	OK	2749.7	0.00377	0.2023	0.7588	0.131	0.066	3139.0	2500.0	2691.0	2819.0	2609.0	2826.0
E024	chr4	102801472	102801508	TRUE	OK	3175.0	0.00502	0.2697	0.7823	0.128	0.064	3703.0	2848.0	3087.0	3240.0	3018.0	3256.0
E025	chr4	102801508	102801522	TRUE	OK	3074.0	0.0065	0.258	0.7783	0.148	0.074	3607.0	2662.0	3009.0	3150.0	2937.0	3183.0
E026	chr4	102801522	102801559	TRUE	OK	3408.6	0.00773	0.2966	0.7908	0.148	0.074	4026.0	2899.0	3372.0	3529.0	3212.0	3531.0
E027	chr4	102801559	102802348	TRUE	OK	95.1	0.026	0.8631	0.9667	-0.023	-0.011	118.0	84.0	100.0	103.0	110.0	58.0
E028	chr4	102802348	102802369	FALSE	LOW_COUNTS_INDEP_FILTER	7.1	0.084	0.6209	NA	NA	NA	5.0	4.0	11.0	9.0	11.0	3.0
E029	chr4	102802369	102802560	TRUE	OK	81.0	0.00927	0.2749	0.7831	-0.222	-0.111	88.0	83.0	102.0	80.0	78.0	56.0
E030	chr4	102802560	102802611	TRUE	OK	4225.2	0.00882	0.1585	0.7383	0.215	0.107	4903.0	3484.0	4155.0	4412.0	4128.0	4423.0
E031	chr4	102802611	102802638	TRUE	OK	4306.6	0.00868	0.2776	0.7841	0.164	0.082	4982.0	3603.0	4388.0	4417.0	4074.0	4526.0
E032	chr4	102802638	102802694	FALSE	LOW_COUNTS_INDEP_FILTER	7.5	0.0237	0.9005	NA	NA	NA	6.0	10.0	7.0	9.0	9.0	4.0
E033	chr4	102809067	102809079	TRUE	OK	16.1	0.0389	0.8871	0.9729	-0.074	-0.037	26.0	10.0	16.0	21.0	12.0	12.0
E034	chr4	102809079	102809159	TRUE	OK	19.4	0.0272	0.5	0.8556	-0.240	-0.120	28.0	17.0	21.0	26.0	12.0	13.0
E035	chr4	102809159	102809184	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.153	0.977	NA	NA	NA	1.0	1.0	6.0	3.0	3.0	1.0
E036	chr4	102809429	102809671	FALSE	LOW_COUNTS_INDEP_FILTER	5.9	0.0296	0.4169	NA	NA	NA	6.0	2.0	8.0	8.0	6.0	6.0
E037	chr4	102809671	102809703	TRUE	OK	4649.0	0.0082	0.4038	0.8252	0.123	0.061	5352.0	3970.0	4851.0	4742.0	4304.0	4829.0
E038	chr4	102809703	102809723	FALSE	LOW_COUNTS_INDEP_FILTER	8.5	0.0834	0.7063	NA	NA	NA	7.0	12.0	9.0	14.0	7.0	2.0
E039	chr4	102809791	102809855	TRUE	OK	5704.9	0.00683	0.5314	0.8658	0.085	0.043	6462.0	5054.0	6069.0	5788.0	5247.0	5782.0
E040	chr4	102809855	102809953	TRUE	OK	87.7	0.0437	0.8433	0.9614	-0.046	-0.023	103.0	65.0	113.0	83.0	113.0	52.0
E041	chr4	102809953	102810369	TRUE	OK	13.6	0.0389	0.2552	0.7776	0.552	0.276	11.0	13.0	11.0	9.0	24.0	14.0
E042	chr4	102810369	102810396	FALSE	LOW_COUNTS_INDEP_FILTER	8.7	0.0559	0.2069	NA	NA	NA	8.0	4.0	9.0	7.0	17.0	8.0
E043	chr4	102810396	102812973	TRUE	OK	51.0	0.00731	1.919e-05	0.009235	0.945	0.472	40.0	32.0	40.0	55.0	66.0	76.0
E044	chr4	102825238	102825317	TRUE	OK	70.1	0.00481	4.107e-09	7.484e-06	1.090	0.545	39.0	53.0	52.0	96.0	97.0	87.0
E045	chr4	102825317	102825477	TRUE	OK	42.2	0.00833	2.111e-10	5.609e-07	1.568	0.784	16.0	27.0	26.0	55.0	64.0	68.0
E046	chr4	102825477	102825540	TRUE	OK	36.6	0.00636	3.672e-08	5.128e-05	1.340	0.670	19.0	24.0	24.0	46.0	51.0	58.0
E047	chr4	102825540	102825542	TRUE	OK	26.1	0.00779	5.032e-06	0.003174	1.282	0.641	13.0	22.0	14.0	35.0	36.0	38.0
E048	chr4	102825542	102825559	TRUE	OK	27.6	0.00731	7.719e-07	0.0006653	1.355	0.678	13.0	22.0	15.0	38.0	39.0	40.0
E049	chr4	102825721	102825737	TRUE	OK	39.2	0.0109	6.757e-05	0.0237	1.032	0.516	27.0	19.0	37.0	51.0	49.0	55.0
E050	chr4	102825737	102825780	TRUE	OK	40.2	0.0328	0.007558	0.3521	0.932	0.466	27.0	18.0	44.0	49.0	44.0	62.0
E051	chr4	102825780	102825785	FALSE	LOW_COUNTS_INDEP_FILTER	7.4	0.0727	0.07487	NA	NA	NA	8.0	1.0	6.0	7.0	8.0	15.0
E052	chr4	102825785	102825860	FALSE	LOW_COUNTS_INDEP_FILTER	9.2	0.076	0.1559	NA	NA	NA	9.0	2.0	10.0	9.0	8.0	18.0
E053	chr4	102826484	102826619	TRUE	OK	7456.9	0.00601	0.3811	0.8173	0.115	0.057	8247.0	6731.0	7882.0	7632.0	6914.0	7555.0
E054	chr4	102826619	102826636	TRUE	OK	3992.0	0.00301	0.2096	0.7612	0.119	0.059	4312.0	3713.0	4131.0	4076.0	3689.0	4146.0
E055	chr4	102826636	102826844	TRUE	OK	1320.0	0.00494	0.001937	0.1869	0.374	0.187	1351.0	1052.0	1274.0	1466.0	1380.0	1449.0
E056	chr4	102826844	102826867	TRUE	OK	287.3	0.00581	0.04388	0.6069	0.289	0.145	311.0	226.0	284.0	326.0	289.0	299.0
E057	chr4	102826867	102827010	TRUE	OK	444.0	0.00491	0.01324	0.429	0.318	0.159	470.0	361.0	425.0	483.0	486.0	456.0
E058	chr4	102827010	102827122	TRUE	OK	429.9	0.00352	0.09372	0.6922	0.190	0.095	474.0	397.0	400.0	437.0	464.0	421.0
E059	chr4	102827426	102827500	TRUE	OK	1502.8	0.00342	0.5349	0.8671	-0.059	-0.029	1677.0	1490.0	1648.0	1499.0	1233.0	1504.0
E060	chr4	102827500	102827520	TRUE	OK	970.7	0.00365	0.7106	0.9231	-0.034	-0.017	1085.0	973.0	1029.0	958.0	786.0	1016.0
E061	chr4	102827520	102827522	TRUE	OK	656.2	0.00451	0.9964	0.999	0.007	0.004	717.0	650.0	693.0	629.0	541.0	724.0
E062	chr4	102827522	102827551	TRUE	OK	661.3	0.00445	0.9083	0.9782	0.021	0.010	718.0	656.0	693.0	639.0	546.0	733.0
E063	chr4	102827551	102827553	TRUE	OK	140.9	0.00697	0.7519	0.9358	0.055	0.027	160.0	124.0	152.0	123.0	132.0	159.0
E064	chr4	102827553	102827566	TRUE	OK	150.7	0.00834	0.9052	0.9774	-0.020	-0.010	171.0	134.0	173.0	129.0	134.0	168.0
E065	chr4	102827591	102827734	TRUE	OK	1198.9	0.00168	0.5943	0.8861	-0.039	-0.019	1327.0	1209.0	1282.0	1168.0	1035.0	1200.0
E066	chr4	102827734	102827741	TRUE	OK	228.6	0.0055	0.06741	0.6586	0.273	0.136	229.0	204.0	223.0	222.0	217.0	285.0
E067	chr4	102827741	102827835	TRUE	OK	214.4	0.00707	0.2218	0.7654	0.206	0.103	227.0	193.0	210.0	208.0	188.0	268.0
E068	chr4	102827835	102827849	TRUE	OK	37.3	0.00863	0.8993	0.9759	0.039	0.019	41.0	36.0	39.0	36.0	26.0	47.0
E069	chr4	102827849	102827943	TRUE	OK	41.6	0.00758	0.629	0.8973	0.118	0.059	45.0	35.0	46.0	51.0	32.0	42.0
E070	chr4	102827943	102827948	TRUE	OK	378.8	0.0061	0.5516	0.8723	0.080	0.040	439.0	324.0	400.0	368.0	379.0	375.0
E071	chr4	102827948	102828010	TRUE	OK	390.4	0.00575	0.4899	0.8527	0.092	0.046	450.0	335.0	409.0	382.0	392.0	387.0
E072	chr4	102828010	102828029	TRUE	OK	211.9	0.00345	0.1972	0.7564	0.163	0.081	243.0	193.0	196.0	233.0	211.0	202.0
E073	chr4	102828029	102828031	TRUE	OK	165.6	0.00274	0.3735	0.8145	0.113	0.056	186.0	154.0	162.0	178.0	164.0	154.0
E074	chr4	102828031	102828064	TRUE	OK	141.8	0.00505	0.6718	0.9109	0.067	0.033	161.0	125.0	151.0	155.0	138.0	125.0
E075	chr4	102828064	102828159	TRUE	OK	63.8	0.00382	0.381	0.8173	0.159	0.080	61.0	64.0	65.0	73.0	62.0	59.0
E076	chr4	102868714	102868861	TRUE	OK	51.1	0.00487	0.0006593	0.1042	0.688	0.344	51.0	39.0	35.0	61.0	63.0	60.0
E077	chr4	102868861	102868875	TRUE	OK	14.1	0.0427	0.2595	0.779	0.502	0.251	14.0	18.0	5.0	17.0	11.0	20.0
E078	chr4	102868875	102868896	FALSE	LOW_COUNTS_INDEP_FILTER	9.5	0.0802	0.2581	NA	NA	NA	4.0	16.0	4.0	10.0	10.0	13.0
J079	chr4	102797460	102798927	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J080	chr4	102797460	102799406	TRUE	OK	2908.9	0.00199	0.7501	0.9353	0.024	0.012	3348.0	2841.0	2905.0	2892.0	2632.0	2912.0
J081	chr4	102798977	102799406	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.56	0.523	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J082	chr4	102799500	102801453	TRUE	OK	2888.8	0.00261	0.1169	0.7135	0.136	0.068	3240.0	2672.0	2825.0	2933.0	2773.0	2978.0
J083	chr4	102801559	102802560	TRUE	OK	2737.9	0.00878	0.225	0.7668	0.183	0.091	3259.0	2259.0	2657.0	2898.0	2595.0	2859.0
J084	chr4	102802638	102809067	TRUE	OK	12.4	0.0101	0.8652	0.9672	-0.063	-0.032	17.0	9.0	14.0	14.0	10.0	11.0
J085	chr4	102802638	102809671	TRUE	OK	3892.2	0.00829	0.3045	0.7928	0.152	0.076	4489.0	3269.0	3997.0	3972.0	3649.0	4112.0
J086	chr4	102809159	102809671	TRUE	OK	11.8	0.0107	0.6784	0.9131	-0.157	-0.078	15.0	14.0	10.0	15.0	7.0	10.0
J087	chr4	102809184	102809671	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.689	0.3494	NA	NA	NA	0.0	0.0	0.0	0.0	2.0	0.0
J088	chr4	102809703	102809791	TRUE	OK	4108.0	0.00734	0.3803	0.8171	0.123	0.062	4670.0	3529.0	4311.0	4173.0	3795.0	4305.0
J089	chr4	102809723	102809791	FALSE	LOW_COUNTS_INDEP_FILTER	6.2	0.0556	0.5958	NA	NA	NA	6.0	7.0	4.0	11.0	7.0	2.0
J090	chr4	102809855	102810369	FALSE	LOW_COUNTS_INDEP_FILTER	4.0	0.108	0.1975	NA	NA	NA	3.0	1.0	4.0	3.0	10.0	3.0
J091	chr4	102809855	102825238	TRUE	OK	56.2	0.00517	8.474e-07	0.0007191	0.986	0.493	31.0	46.0	44.0	73.0	78.0	68.0
J092	chr4	102809855	102825477	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.615	0.6383	NA	NA	NA	0.0	0.0	3.0	1.0	0.0	0.0
J093	chr4	102809855	102825721	FALSE	LOW_COUNTS_INDEP_FILTER	9.6	0.109	0.5101	NA	NA	NA	9.0	2.0	16.0	8.0	13.0	10.0
J094	chr4	102809855	102825737	FALSE	LOW_COUNTS_INDEP_FILTER	5.0	0.0501	0.6308	NA	NA	NA	3.0	4.0	7.0	2.0	6.0	8.0
J095	chr4	102809855	102826484	TRUE	OK	4718.7	0.00561	0.6853	0.9153	0.051	0.025	5325.0	4265.0	5075.0	4738.0	4254.0	4792.0
J096	chr4	102809855	102868714	FALSE	LOW_COUNTS_INDEP_FILTER	9.3	0.0117	0.3629	NA	NA	NA	14.0	9.0	10.0	6.0	8.0	9.0
J097	chr4	102825317	102825721	FALSE	LOW_COUNTS_INDEP_FILTER	6.7	0.0167	0.5897	NA	NA	NA	4.0	9.0	6.0	8.0	5.0	8.0
J098	chr4	102825317	102825737	FALSE	LOW_COUNTS_INDEP_FILTER	5.9	0.0167	0.006527	NA	NA	NA	3.0	3.0	4.0	11.0	8.0	7.0
J099	chr4	102826619	102868714	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.121	0.2997	NA	NA	NA	1.0	0.0	0.0	1.0	1.0	1.0
J100	chr4	102826636	102827426	TRUE	OK	1387.6	0.00304	0.5987	0.8876	-0.046	-0.023	1535.0	1387.0	1506.0	1399.0	1132.0	1398.0
J101	chr4	102826636	102827591	TRUE	OK	938.9	0.000834	0.1353	0.7264	-0.091	-0.046	1049.0	971.0	1018.0	918.0	805.0	891.0
J102	chr4	102826636	102827734	FALSE	LOW_COUNTS_INDEP_FILTER	5.9	0.016	0.1408	NA	NA	NA	6.0	3.0	5.0	7.0	7.0	8.0
J103	chr4	102826636	102827943	TRUE	OK	353.1	0.00636	0.6683	0.9098	0.058	0.029	409.0	305.0	378.0	331.0	360.0	347.0
J104	chr4	102826636	102868714	TRUE	OK	32.2	0.00778	0.000665	0.1047	0.872	0.436	33.0	20.0	20.0	43.0	44.0	35.0
J105	chr4	102826844	102827426	TRUE	OK	10.8	0.0341	0.9887	0.9973	-0.001	-0.001	13.0	6.0	15.0	15.0	7.0	9.0
J106	chr4	102826844	102827591	FALSE	LOW_COUNTS_INDEP_FILTER	7.2	0.0418	0.1018	NA	NA	NA	7.0	4.0	5.0	4.0	11.0	13.0
J107	chr4	102826844	102827943	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.0594	0.8049	NA	NA	NA	6.0	1.0	2.0	2.0	2.0	3.0
J108	chr4	102827741	102827943	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.266	0.9523	NA	NA	NA	1.0	0.0	0.0	1.0	0.0	0.0
N109	chr4	102826636	102827152	TRUE	OK	21.9	0.00685	0.3658	0.8122	0.261	0.130	26.0	18.0	19.0	29.0	21.0	19.0
N110	chr4	102826636	102827511	TRUE	OK	21.7	0.0124	0.3687	0.8131	0.284	0.142	22.0	14.0	26.0	26.0	17.0	26.0
N111	chr4	102826636	102827599	TRUE	OK	30.8	0.00498	0.6434	0.9022	0.113	0.056	27.0	37.0	29.0	36.0	28.0	28.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000109332.20
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE