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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr7 | 128392276 | 128392277 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.389 | 0.9319 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 | 0.0 |
E002 | chr7 | 128392277 | 128392292 | TRUE | OK | 37.5 | 0.00756 | 0.9006 | 0.9763 | -0.035 | -0.018 | 37.5 | 53.2 | 32.2 | 34.7 | 36.2 | 30.9 |
E003 | chr7 | 128392292 | 128392300 | TRUE | OK | 64.7 | 0.0207 | 0.7821 | 0.945 | -0.120 | -0.060 | 58.2 | 106.4 | 53.4 | 58.6 | 53.9 | 58.0 |
E004 | chr7 | 128392300 | 128392738 | TRUE | OK | 1986.8 | 0.0113 | 0.2533 | 0.7766 | -0.228 | -0.114 | 1961.2 | 2871.6 | 1984.2 | 1759.2 | 1708.8 | 1635.9 |
E005 | chr7 | 128392738 | 128392849 | TRUE | OK | 1532.7 | 0.00525 | 0.7586 | 0.938 | -0.047 | -0.023 | 1564.8 | 1977.0 | 1487.7 | 1489.2 | 1345.5 | 1332.3 |
E006 | chr7 | 128392849 | 128393028 | TRUE | OK | 2135.9 | 0.0044 | 0.5892 | 0.8845 | -0.067 | -0.033 | 2194.9 | 2685.0 | 2158.5 | 2042.2 | 1843.0 | 1892.1 |
E007 | chr7 | 128393721 | 128393738 | TRUE | OK | 44.9 | 0.00601 | 0.7588 | 0.9381 | 0.068 | 0.034 | 47.3 | 41.7 | 53.4 | 36.7 | 46.0 | 44.5 |
E008 | chr7 | 128394274 | 128394277 | TRUE | OK | 41.9 | 0.0197 | 0.2916 | 0.7891 | 0.333 | 0.166 | 37.5 | 40.7 | 43.3 | 27.8 | 54.8 | 47.4 |
E009 | chr7 | 128394277 | 128394361 | TRUE | OK | 1564.4 | 0.00391 | 0.5206 | 0.8625 | -0.068 | -0.034 | 1657.5 | 1874.8 | 1629.7 | 1509.0 | 1243.7 | 1471.5 |
E010 | chr7 | 128394455 | 128394599 | TRUE | OK | 1814.1 | 0.00292 | 0.5069 | 0.8581 | -0.061 | -0.030 | 1893.1 | 2111.5 | 1967.1 | 1744.3 | 1469.9 | 1698.7 |
E011 | chr7 | 128394599 | 128394888 | TRUE | OK | 100.4 | 0.0132 | 0.9966 | 0.9991 | 0.008 | 0.004 | 100.6 | 99.1 | 124.9 | 73.5 | 112.6 | 91.8 |
E012 | chr7 | 128394888 | 128394998 | TRUE | OK | 1680.1 | 0.00133 | 0.8793 | 0.9709 | 0.011 | 0.005 | 1776.8 | 1922.8 | 1728.4 | 1583.5 | 1470.9 | 1598.2 |
E013 | chr7 | 128394998 | 128395033 | TRUE | OK | 1173.7 | 0.00242 | 0.6248 | 0.8961 | 0.040 | 0.020 | 1160.5 | 1410.8 | 1188.5 | 1075.2 | 1075.2 | 1132.2 |
E014 | chr7 | 128395130 | 128395171 | TRUE | OK | 1321.0 | 0.00323 | 0.8348 | 0.9592 | 0.017 | 0.008 | 1290.7 | 1612.0 | 1357.7 | 1208.2 | 1174.2 | 1283.0 |
E015 | chr7 | 128395171 | 128395274 | TRUE | OK | 1692.1 | 0.00116 | 0.952 | 0.9889 | -0.005 | -0.002 | 1723.5 | 1985.3 | 1780.8 | 1614.3 | 1483.6 | 1565.3 |
E016 | chr7 | 128396599 | 128396695 | TRUE | OK | 1612.0 | 0.00373 | 0.1946 | 0.7559 | 0.140 | 0.070 | 1780.7 | 1631.9 | 1610.5 | 1626.2 | 1449.3 | 1573.0 |
E017 | chr7 | 128396931 | 128397022 | TRUE | OK | 1660.3 | 0.00577 | 0.3666 | 0.8125 | 0.118 | 0.059 | 1906.9 | 1617.3 | 1683.1 | 1683.8 | 1546.3 | 1524.7 |
E018 | chr7 | 128398413 | 128398489 | TRUE | OK | 1404.5 | 0.00635 | 0.5927 | 0.8856 | 0.072 | 0.036 | 1649.6 | 1370.1 | 1438.3 | 1412.7 | 1282.9 | 1273.3 |
E019 | chr7 | 128398489 | 128398613 | TRUE | OK | 1727.7 | 0.00342 | 0.9836 | 0.996 | 0.001 | 0.000 | 1942.4 | 1817.5 | 1836.2 | 1680.8 | 1473.8 | 1615.6 |
E020 | chr7 | 128400094 | 128400134 | TRUE | OK | 1420.6 | 0.0023 | 0.6306 | 0.8979 | -0.040 | -0.020 | 1571.7 | 1533.8 | 1547.1 | 1316.4 | 1212.3 | 1342.0 |
E021 | chr7 | 128400134 | 128400182 | TRUE | OK | 1330.7 | 0.0022 | 0.6209 | 0.8948 | -0.040 | -0.020 | 1453.4 | 1449.4 | 1456.4 | 1233.0 | 1127.2 | 1264.6 |
E022 | chr7 | 128400182 | 128400204 | TRUE | OK | 52.4 | 0.0201 | 0.2798 | 0.785 | -0.303 | -0.152 | 65.1 | 49.0 | 71.5 | 50.6 | 49.0 | 29.0 |
E023 | chr7 | 128400332 | 128400536 | TRUE | OK | 1980.5 | 0.0053 | 0.3922 | 0.8213 | 0.107 | 0.053 | 2178.1 | 1916.5 | 2142.4 | 1867.4 | 1847.9 | 1930.8 |
E024 | chr7 | 128400536 | 128400539 | TRUE | OK | 928.8 | 0.0113 | 0.2145 | 0.7632 | 0.217 | 0.108 | 1043.2 | 772.7 | 1002.2 | 905.4 | 907.8 | 941.7 |
E025 | chr7 | 128400539 | 128400671 | TRUE | OK | 66.0 | 0.0118 | 0.8907 | 0.9739 | -0.031 | -0.016 | 81.8 | 58.4 | 75.5 | 54.6 | 71.5 | 54.1 |
E026 | chr7 | 128400671 | 128400685 | TRUE | OK | 36.1 | 0.0145 | 0.4043 | 0.8253 | 0.239 | 0.120 | 37.5 | 29.2 | 41.3 | 27.8 | 45.0 | 35.8 |
E027 | chr7 | 128400685 | 128400816 | TRUE | OK | 49.5 | 0.0147 | 0.6883 | 0.9162 | 0.108 | 0.054 | 45.4 | 45.9 | 63.5 | 41.7 | 59.7 | 40.6 |
E028 | chr7 | 128400816 | 128400831 | TRUE | OK | 1047.6 | 0.0123 | 0.2382 | 0.7716 | 0.213 | 0.106 | 1187.2 | 862.3 | 1135.1 | 1027.5 | 1022.4 | 1051.0 |
E029 | chr7 | 128400831 | 128400842 | TRUE | OK | 991.6 | 0.0126 | 0.128 | 0.7222 | 0.281 | 0.140 | 1089.5 | 792.5 | 1067.7 | 985.8 | 1003.8 | 1010.3 |
E030 | chr7 | 128400842 | 128400891 | TRUE | OK | 1176.8 | 0.0109 | 0.1214 | 0.7171 | 0.268 | 0.134 | 1298.6 | 976.0 | 1245.9 | 1161.6 | 1179.1 | 1199.8 |
E031 | chr7 | 128401014 | 128401116 | TRUE | OK | 1641.8 | 0.0109 | 0.1025 | 0.7004 | 0.283 | 0.142 | 1805.4 | 1382.6 | 1721.3 | 1603.4 | 1653.0 | 1685.2 |
E032 | chr7 | 128403705 | 128403754 | TRUE | OK | 1271.8 | 0.0101 | 0.1503 | 0.7349 | 0.240 | 0.120 | 1405.1 | 1077.1 | 1357.7 | 1282.7 | 1221.2 | 1286.9 |
E033 | chr7 | 128405766 | 128405865 | TRUE | OK | 1163.5 | 0.00943 | 0.3401 | 0.804 | 0.153 | 0.076 | 1287.7 | 1014.6 | 1302.3 | 1171.5 | 1104.6 | 1100.3 |
E034 | chr7 | 128405865 | 128405939 | TRUE | OK | 667.8 | 0.00993 | 0.9559 | 0.9897 | -0.015 | -0.008 | 744.4 | 606.9 | 821.9 | 661.2 | 587.6 | 584.9 |
E035 | chr7 | 128405939 | 128405942 | TRUE | OK | 166.4 | 0.0163 | 0.5674 | 0.8773 | -0.124 | -0.062 | 208.0 | 153.3 | 198.4 | 174.7 | 151.8 | 112.2 |
E036 | chr7 | 128405942 | 128405948 | TRUE | OK | 160.2 | 0.0164 | 0.624 | 0.8959 | -0.109 | -0.054 | 198.2 | 143.9 | 194.4 | 169.8 | 144.0 | 111.2 |
E037 | chr7 | 128409288 | 128409352 | TRUE | OK | 84.1 | 0.00395 | 0.02222 | 0.5077 | 0.381 | 0.191 | 82.8 | 76.1 | 80.6 | 81.4 | 85.2 | 98.6 |
E038 | chr7 | 128409352 | 128409366 | TRUE | OK | 60.9 | 0.00533 | 0.07878 | 0.6755 | 0.343 | 0.172 | 62.1 | 57.3 | 56.4 | 56.6 | 58.8 | 74.4 |
E039 | chr7 | 128409366 | 128409440 | TRUE | OK | 64.3 | 0.0063 | 0.0571 | 0.6418 | 0.380 | 0.190 | 61.1 | 63.6 | 58.4 | 54.6 | 69.5 | 78.3 |
E040 | chr7 | 128409440 | 128409484 | TRUE | OK | 63.4 | 0.00772 | 0.03791 | 0.5858 | 0.436 | 0.218 | 57.2 | 54.2 | 65.5 | 56.6 | 67.6 | 79.3 |
E041 | chr7 | 128409484 | 128409486 | TRUE | OK | 17.6 | 0.0821 | 0.7539 | 0.9364 | 0.214 | 0.107 | 25.6 | 11.5 | 16.1 | 6.9 | 21.5 | 24.2 |
E042 | chr7 | 128409755 | 128409901 | TRUE | OK | 208.1 | 0.00809 | 0.001492 | 0.1638 | 0.541 | 0.270 | 179.5 | 159.5 | 220.6 | 250.2 | 224.3 | 214.6 |
E043 | chr7 | 128409901 | 128409947 | TRUE | OK | 91.2 | 0.00746 | 0.0005964 | 0.09854 | 0.662 | 0.331 | 74.9 | 73.0 | 85.6 | 128.1 | 90.1 | 95.7 |
E044 | chr7 | 128409947 | 128409982 | TRUE | OK | 45.3 | 0.00928 | 4.346e-05 | 0.01692 | 0.989 | 0.494 | 29.6 | 31.3 | 40.3 | 70.5 | 51.9 | 48.3 |
E045 | chr7 | 128409982 | 128409986 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.0221 | 0.181 | NA | NA | NA | 5.9 | 5.2 | 11.1 | 12.9 | 7.8 | 8.7 |
E046 | chr7 | 128409986 | 128410252 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.1 | 0.0343 | 0.1874 | NA | NA | NA | 2.0 | 4.2 | 9.1 | 6.9 | 6.9 | 7.7 |
J047 | chr7 | 128393028 | 128393721 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.1 | 0.0423 | 0.8421 | NA | NA | NA | 4.9 | 6.3 | 11.1 | 6.0 | 3.9 | 10.6 |
J048 | chr7 | 128393028 | 128394277 | TRUE | OK | 1046.5 | 0.00466 | 0.4999 | 0.8556 | -0.083 | -0.041 | 1098.4 | 1320.1 | 1052.5 | 1005.7 | 827.5 | 974.6 |
J049 | chr7 | 128393738 | 128394277 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.5 | 0.0526 | 0.5172 | NA | NA | NA | 3.9 | 5.2 | 9.1 | 6.9 | 2.9 | 10.6 |
J050 | chr7 | 128394361 | 128394455 | TRUE | OK | 1100.1 | 0.00427 | 0.4284 | 0.8325 | -0.087 | -0.044 | 1151.7 | 1319.0 | 1182.5 | 1038.5 | 849.0 | 1059.7 |
J051 | chr7 | 128394599 | 128394888 | TRUE | OK | 911.3 | 0.00201 | 0.7309 | 0.9297 | 0.032 | 0.016 | 988.0 | 966.6 | 970.0 | 903.4 | 777.5 | 862.4 |
J052 | chr7 | 128394998 | 128395130 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.0 | 0.0226 | 0.009467 | NA | NA | NA | 2.0 | 2.1 | 2.0 | 6.9 | 5.9 | 4.8 |
J053 | chr7 | 128395033 | 128395130 | TRUE | OK | 1060.5 | 0.00337 | 0.7094 | 0.9227 | 0.034 | 0.017 | 1044.2 | 1301.3 | 1057.6 | 948.1 | 974.4 | 1037.4 |
J054 | chr7 | 128395274 | 128396599 | TRUE | OK | 1050.2 | 0.00208 | 0.5341 | 0.8668 | -0.050 | -0.025 | 1124.0 | 1187.7 | 1139.2 | 1026.5 | 853.0 | 970.7 |
J055 | chr7 | 128396695 | 128396931 | TRUE | OK | 1067.5 | 0.0061 | 0.09902 | 0.697 | 0.221 | 0.111 | 1210.8 | 989.5 | 1036.4 | 1115.9 | 1021.4 | 1030.6 |
J056 | chr7 | 128397022 | 128398413 | TRUE | OK | 1146.5 | 0.00783 | 0.1539 | 0.7362 | 0.213 | 0.106 | 1317.3 | 1029.2 | 1141.2 | 1188.4 | 1107.6 | 1095.4 |
J057 | chr7 | 128398613 | 128400094 | TRUE | OK | 1099.0 | 0.00219 | 0.8413 | 0.961 | -0.015 | -0.007 | 1203.9 | 1197.0 | 1174.4 | 1037.5 | 921.5 | 1059.7 |
J058 | chr7 | 128400182 | 128400332 | TRUE | OK | 989.5 | 0.00192 | 0.938 | 0.9853 | 0.008 | 0.004 | 1077.7 | 1065.7 | 1054.6 | 914.4 | 857.8 | 966.8 |
J059 | chr7 | 128400204 | 128400332 | TRUE | OK | 13.4 | 0.00894 | 0.02669 | 0.5353 | 0.800 | 0.400 | 8.9 | 11.5 | 12.1 | 12.9 | 19.6 | 15.5 |
J060 | chr7 | 128400536 | 128400816 | TRUE | OK | 82.2 | 0.012 | 0.8922 | 0.9741 | 0.024 | 0.012 | 108.5 | 73.0 | 82.6 | 70.5 | 85.2 | 73.5 |
J061 | chr7 | 128400539 | 128400816 | TRUE | OK | 829.7 | 0.0127 | 0.175 | 0.7462 | 0.250 | 0.125 | 933.8 | 669.4 | 885.3 | 815.1 | 817.7 | 856.6 |
J062 | chr7 | 128400539 | 128400831 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.7 | 0.0217 | 0.3625 | NA | NA | NA | 4.9 | 7.3 | 9.1 | 6.9 | 3.9 | 1.9 |
J063 | chr7 | 128400539 | 128401014 | TRUE | OK | 63.7 | 0.00253 | 0.9069 | 0.9778 | -0.019 | -0.010 | 61.1 | 73.0 | 73.5 | 61.6 | 56.8 | 56.1 |
J064 | chr7 | 128400891 | 128401014 | TRUE | OK | 943.6 | 0.00893 | 0.07667 | 0.6735 | 0.283 | 0.141 | 1031.4 | 798.7 | 974.0 | 922.3 | 956.8 | 978.4 |
J065 | chr7 | 128401116 | 128403705 | TRUE | OK | 1057.9 | 0.0104 | 0.1255 | 0.7205 | 0.260 | 0.130 | 1174.3 | 887.4 | 1107.9 | 1036.5 | 1042.0 | 1099.3 |
J066 | chr7 | 128403754 | 128405766 | TRUE | OK | 970.1 | 0.00963 | 0.1636 | 0.7408 | 0.229 | 0.114 | 1071.8 | 822.7 | 1038.4 | 980.9 | 918.6 | 988.1 |
J067 | chr7 | 128403754 | 128409288 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.0635 | 0.00096 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 4.0 | 2.9 | 1.9 |
J068 | chr7 | 128403754 | 128409755 | TRUE | OK | 24.4 | 0.0117 | 0.1858 | 0.7511 | 0.400 | 0.200 | 21.7 | 27.1 | 20.1 | 18.9 | 24.5 | 33.8 |
J069 | chr7 | 128405865 | 128409288 | TRUE | OK | 47.2 | 0.00386 | 0.1141 | 0.7118 | 0.318 | 0.159 | 46.3 | 43.8 | 47.3 | 41.7 | 55.8 | 48.3 |
J070 | chr7 | 128405865 | 128409755 | TRUE | OK | 80.9 | 0.0144 | 0.05754 | 0.6427 | 0.445 | 0.223 | 76.9 | 55.3 | 92.7 | 89.4 | 93.0 | 78.3 |
J071 | chr7 | 128409352 | 128409440 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.565 | 0.391 | NA | NA | NA | 0.0 | 2.1 | 0.0 | 0.0 | 0.0 | 0.0 |
J072 | chr7 | 128409352 | 128409755 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.0395 | 0.325 | NA | NA | NA | 1.0 | 2.1 | 2.0 | 3.0 | 2.0 | 2.9 |
J073 | chr7 | 128409366 | 128409755 | TRUE | OK | 9.9 | 0.0158 | 0.1178 | 0.7142 | 0.673 | 0.336 | 11.8 | 4.2 | 9.1 | 13.9 | 10.8 | 9.7 |
J074 | chr7 | 128409484 | 128409755 | TRUE | OK | 35.1 | 0.00418 | 0.03165 | 0.5596 | 0.487 | 0.243 | 27.6 | 30.2 | 38.3 | 40.7 | 37.2 | 36.7 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000106348.18 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |