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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr5 | 72816311 | 72816623 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0815 | 0.24 | NA | NA | NA | 4.9 | 2.1 | 3.0 | 0.0 | 1.0 | 3.9 |
E002 | chr5 | 72816623 | 72816648 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.4 | 0.0412 | 0.9103 | NA | NA | NA | 5.9 | 1.0 | 6.0 | 3.0 | 3.9 | 6.8 |
E003 | chr5 | 72816648 | 72816671 | TRUE | OK | 27.3 | 0.0253 | 0.1911 | 0.7541 | 0.420 | 0.210 | 20.7 | 12.5 | 36.3 | 33.8 | 25.5 | 34.8 |
E004 | chr5 | 72816671 | 72816752 | TRUE | OK | 253.2 | 0.0101 | 0.0005205 | 0.09091 | 0.611 | 0.306 | 232.7 | 126.2 | 239.7 | 347.5 | 268.3 | 304.6 |
E005 | chr5 | 72816792 | 72816954 | TRUE | OK | 11.2 | 0.0845 | 0.6901 | 0.9168 | 0.118 | 0.059 | 20.7 | 4.2 | 7.1 | 7.9 | 10.8 | 16.4 |
E006 | chr5 | 72825734 | 72825821 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.135 | 0.9617 | NA | NA | NA | 0.0 | 2.1 | 1.0 | 1.0 | 1.0 | 1.0 |
E007 | chr5 | 72848169 | 72848183 | TRUE | OK | 136.3 | 0.0146 | 0.2579 | 0.7783 | 0.211 | 0.105 | 148.9 | 73.0 | 155.1 | 145.9 | 156.7 | 138.3 |
E008 | chr5 | 72848183 | 72848251 | TRUE | OK | 370.0 | 0.025 | 0.1947 | 0.7559 | 0.278 | 0.139 | 404.3 | 178.3 | 417.0 | 414.0 | 444.6 | 361.6 |
E009 | chr5 | 72848384 | 72848498 | TRUE | OK | 1244.2 | 0.0178 | 0.08127 | 0.6786 | 0.328 | 0.164 | 1338.0 | 643.4 | 1333.6 | 1437.6 | 1360.2 | 1352.6 |
E010 | chr5 | 72851204 | 72851237 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.277 | 0.1983 | NA | NA | NA | 3.9 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
E011 | chr5 | 72851237 | 72851243 | TRUE | OK | 81.1 | 0.0132 | 0.3289 | 0.8007 | 0.188 | 0.094 | 93.7 | 41.7 | 90.7 | 96.3 | 83.2 | 81.2 |
E012 | chr5 | 72851243 | 72851319 | TRUE | OK | 1254.2 | 0.0188 | 0.104 | 0.7014 | 0.308 | 0.154 | 1383.4 | 643.4 | 1338.6 | 1449.5 | 1304.4 | 1405.8 |
E013 | chr5 | 72855773 | 72855916 | TRUE | OK | 1454.8 | 0.0158 | 0.1732 | 0.7455 | 0.232 | 0.116 | 1639.7 | 806.0 | 1569.3 | 1615.3 | 1450.3 | 1648.5 |
E014 | chr5 | 72855916 | 72855923 | TRUE | OK | 769.6 | 0.013 | 0.1216 | 0.7172 | 0.257 | 0.128 | 863.7 | 436.9 | 798.7 | 842.9 | 764.8 | 910.8 |
E015 | chr5 | 72861807 | 72861914 | TRUE | OK | 1204.6 | 0.0112 | 0.2116 | 0.7621 | 0.184 | 0.092 | 1372.5 | 723.6 | 1282.2 | 1370.0 | 1154.6 | 1324.6 |
E016 | chr5 | 72861914 | 72861915 | TRUE | OK | 10.4 | 0.025 | 0.0707 | 0.6641 | 0.840 | 0.420 | 5.9 | 7.3 | 9.1 | 15.9 | 16.6 | 7.7 |
E017 | chr5 | 72862353 | 72862396 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.184 | 0.2566 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 4.0 | 1.0 | 1.0 |
E018 | chr5 | 72865595 | 72865693 | TRUE | OK | 1083.3 | 0.0119 | 0.3781 | 0.8162 | 0.132 | 0.066 | 1256.2 | 671.5 | 1165.4 | 1301.5 | 967.5 | 1138.0 |
E019 | chr5 | 72865693 | 72865729 | TRUE | OK | 829.8 | 0.0191 | 0.3007 | 0.7917 | 0.187 | 0.094 | 988.0 | 451.5 | 882.3 | 1007.7 | 746.2 | 903.0 |
E020 | chr5 | 72865729 | 72865731 | TRUE | OK | 12.3 | 0.024 | 0.8645 | 0.967 | -0.057 | -0.029 | 14.8 | 12.5 | 10.1 | 17.9 | 11.8 | 6.8 |
E021 | chr5 | 72871746 | 72871889 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.246 | 0.7791 | NA | NA | NA | 2.0 | 6.3 | 0.0 | 2.0 | 1.0 | 2.9 |
E022 | chr5 | 72872638 | 72872667 | TRUE | OK | 858.2 | 0.02 | 0.342 | 0.8047 | 0.166 | 0.083 | 1025.4 | 460.9 | 933.7 | 1023.6 | 782.4 | 923.3 |
E023 | chr5 | 72872667 | 72872720 | TRUE | OK | 940.0 | 0.0171 | 0.5352 | 0.8672 | 0.082 | 0.041 | 1121.1 | 538.0 | 1070.7 | 1067.2 | 847.1 | 995.8 |
E024 | chr5 | 72875614 | 72875737 | TRUE | OK | 1182.8 | 0.0128 | 0.2812 | 0.7853 | 0.160 | 0.080 | 1345.9 | 697.6 | 1301.3 | 1318.4 | 1136.9 | 1296.5 |
E025 | chr5 | 72877227 | 72877346 | TRUE | OK | 1148.2 | 0.00842 | 0.213 | 0.7626 | 0.163 | 0.081 | 1282.8 | 727.8 | 1232.8 | 1219.1 | 1141.8 | 1284.9 |
E026 | chr5 | 72882466 | 72882527 | TRUE | OK | 954.5 | 0.00674 | 0.07476 | 0.6699 | 0.226 | 0.113 | 1038.3 | 607.9 | 988.1 | 1024.6 | 982.2 | 1085.8 |
E027 | chr5 | 72883063 | 72883097 | TRUE | OK | 943.7 | 0.0043 | 0.5006 | 0.8558 | 0.060 | 0.030 | 1092.5 | 674.6 | 993.1 | 974.9 | 903.9 | 1022.9 |
E028 | chr5 | 72883097 | 72883099 | TRUE | OK | 816.8 | 0.00468 | 0.569 | 0.8778 | 0.050 | 0.025 | 950.5 | 576.6 | 870.2 | 853.8 | 770.7 | 878.9 |
E029 | chr5 | 72883099 | 72883232 | TRUE | OK | 1455.0 | 0.00375 | 0.1576 | 0.738 | 0.133 | 0.066 | 1635.8 | 1018.7 | 1500.8 | 1590.4 | 1434.6 | 1549.8 |
E030 | chr5 | 72887069 | 72887210 | TRUE | OK | 1701.2 | 0.00256 | 0.119 | 0.7152 | 0.126 | 0.063 | 1873.4 | 1228.3 | 1770.7 | 1872.4 | 1699.1 | 1763.5 |
E031 | chr5 | 72887210 | 72887222 | TRUE | OK | 1073.5 | 0.00364 | 0.05601 | 0.6402 | 0.186 | 0.093 | 1182.2 | 733.0 | 1090.8 | 1196.3 | 1096.8 | 1141.8 |
E032 | chr5 | 72888077 | 72888303 | TRUE | OK | 1968.8 | 0.00571 | 0.1009 | 0.6988 | 0.187 | 0.093 | 2118.9 | 1304.4 | 2105.1 | 2207.0 | 2007.5 | 2070.0 |
E033 | chr5 | 72889785 | 72889957 | TRUE | OK | 1525.4 | 0.00901 | 0.1695 | 0.7442 | 0.185 | 0.092 | 1753.1 | 949.9 | 1577.3 | 1706.6 | 1514.0 | 1651.4 |
E034 | chr5 | 72891809 | 72891896 | TRUE | OK | 1125.1 | 0.00776 | 0.1436 | 0.7319 | 0.189 | 0.094 | 1333.1 | 726.8 | 1088.8 | 1238.0 | 1124.2 | 1239.5 |
E035 | chr5 | 72893138 | 72893246 | TRUE | OK | 1242.5 | 0.00439 | 0.1531 | 0.7358 | 0.146 | 0.073 | 1448.4 | 874.8 | 1207.7 | 1355.2 | 1229.0 | 1340.0 |
E036 | chr5 | 72893376 | 72893535 | TRUE | OK | 1719.1 | 0.00303 | 0.273 | 0.783 | 0.092 | 0.046 | 1986.8 | 1267.9 | 1724.4 | 1903.2 | 1653.0 | 1779.0 |
E037 | chr5 | 72893615 | 72893675 | TRUE | OK | 1439.0 | 0.00431 | 0.2833 | 0.7861 | 0.106 | 0.053 | 1675.2 | 1028.1 | 1443.4 | 1636.1 | 1363.2 | 1488.0 |
E038 | chr5 | 72893675 | 72893703 | TRUE | OK | 1256.9 | 0.00724 | 0.212 | 0.7622 | 0.155 | 0.078 | 1493.8 | 834.2 | 1232.8 | 1456.4 | 1211.4 | 1313.0 |
E039 | chr5 | 72896457 | 72896556 | TRUE | OK | 1652.8 | 0.0059 | 0.05679 | 0.6415 | 0.224 | 0.112 | 1879.3 | 1085.5 | 1611.6 | 1877.4 | 1673.6 | 1789.6 |
E040 | chr5 | 72897055 | 72897151 | TRUE | OK | 1544.4 | 0.006 | 0.04186 | 0.6003 | 0.244 | 0.122 | 1741.3 | 1002.1 | 1501.8 | 1781.1 | 1569.8 | 1670.7 |
E041 | chr5 | 72900005 | 72900081 | TRUE | OK | 1332.3 | 0.0029 | 0.2718 | 0.7829 | 0.094 | 0.047 | 1529.3 | 994.8 | 1330.5 | 1422.7 | 1270.1 | 1446.4 |
E042 | chr5 | 72900873 | 72900973 | TRUE | OK | 20.1 | 0.0586 | 0.2724 | 0.783 | -0.461 | -0.231 | 28.6 | 19.8 | 21.2 | 25.8 | 19.6 | 5.8 |
E043 | chr5 | 72900973 | 72901073 | TRUE | OK | 1514.6 | 0.00182 | 0.2299 | 0.7691 | 0.088 | 0.044 | 1685.1 | 1182.4 | 1523.9 | 1607.3 | 1434.6 | 1654.3 |
E044 | chr5 | 72903708 | 72903783 | TRUE | OK | 1350.2 | 0.00261 | 0.4598 | 0.8429 | 0.067 | 0.034 | 1496.8 | 1089.6 | 1355.7 | 1417.7 | 1231.9 | 1509.2 |
E045 | chr5 | 72905302 | 72905429 | TRUE | OK | 1395.6 | 0.00275 | 0.2282 | 0.7684 | 0.114 | 0.057 | 1508.6 | 1123.0 | 1379.9 | 1478.3 | 1290.7 | 1593.3 |
E046 | chr5 | 72905429 | 72905445 | TRUE | OK | 737.3 | 0.00453 | 0.3947 | 0.8222 | 0.113 | 0.056 | 773.0 | 621.5 | 723.2 | 804.2 | 641.4 | 860.5 |
E047 | chr5 | 72905445 | 72905580 | TRUE | OK | 60.6 | 0.0108 | 0.1528 | 0.7358 | 0.337 | 0.169 | 53.2 | 61.5 | 45.3 | 69.5 | 61.7 | 72.5 |
E048 | chr5 | 72908708 | 72908913 | TRUE | OK | 1580.0 | 0.00268 | 0.006257 | 0.3249 | 0.254 | 0.127 | 1624.9 | 1238.8 | 1465.5 | 1768.2 | 1519.8 | 1863.1 |
E049 | chr5 | 72908913 | 72908951 | TRUE | OK | 1011.1 | 0.00113 | 2.809e-05 | 0.01212 | 0.283 | 0.141 | 1021.5 | 785.2 | 927.7 | 1137.7 | 1040.0 | 1154.4 |
E050 | chr5 | 72908951 | 72916733 | TRUE | OK | 12429.6 | 0.0118 | 0.07566 | 0.6718 | -0.292 | -0.145 | 13573.4 | 12368.7 | 13002.2 | 12540.9 | 11269.6 | 11822.5 |
J051 | chr5 | 72816752 | 72825734 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.499 | 0.6658 | NA | NA | NA | 0.0 | 2.1 | 0.0 | 0.0 | 0.0 | 1.0 |
J052 | chr5 | 72816752 | 72848384 | TRUE | OK | 250.2 | 0.0107 | 0.0005129 | 0.09045 | 0.628 | 0.314 | 228.8 | 122.0 | 236.7 | 345.5 | 267.3 | 300.7 |
J053 | chr5 | 72816954 | 72848384 | TRUE | OK | 10.0 | 0.186 | 0.5202 | 0.8624 | 0.192 | 0.096 | 20.7 | 1.0 | 6.0 | 6.9 | 9.8 | 15.5 |
J054 | chr5 | 72825821 | 72848384 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.174 | 0.6125 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 1.0 |
J055 | chr5 | 72848251 | 72848384 | TRUE | OK | 365.0 | 0.0265 | 0.1976 | 0.7566 | 0.285 | 0.142 | 396.4 | 175.2 | 412.0 | 406.1 | 442.6 | 357.7 |
J056 | chr5 | 72848498 | 72851204 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J057 | chr5 | 72848498 | 72851237 | TRUE | OK | 74.4 | 0.0103 | 0.4411 | 0.8366 | 0.138 | 0.069 | 82.8 | 40.7 | 87.6 | 85.4 | 77.4 | 72.5 |
J058 | chr5 | 72848498 | 72851243 | TRUE | OK | 907.5 | 0.0176 | 0.07795 | 0.6749 | 0.333 | 0.167 | 969.2 | 467.1 | 972.0 | 1039.5 | 969.5 | 1027.7 |
J059 | chr5 | 72851319 | 72855773 | TRUE | OK | 918.4 | 0.0211 | 0.2097 | 0.7612 | 0.240 | 0.120 | 1051.1 | 474.4 | 997.2 | 1018.6 | 897.0 | 1072.2 |
J060 | chr5 | 72851319 | 72861807 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.6 | 0.128 | 0.3613 | NA | NA | NA | 2.0 | 4.2 | 15.1 | 8.9 | 13.7 | 7.7 |
J061 | chr5 | 72855923 | 72861807 | TRUE | OK | 758.6 | 0.0126 | 0.121 | 0.7167 | 0.255 | 0.128 | 854.9 | 434.8 | 780.6 | 828.0 | 753.1 | 900.1 |
J062 | chr5 | 72855923 | 72872638 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.265 | 0.2522 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 |
J063 | chr5 | 72861914 | 72862353 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.523 | 0.9792 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 2.0 | 0.0 | 0.0 |
J064 | chr5 | 72861914 | 72865595 | TRUE | OK | 729.0 | 0.009 | 0.5172 | 0.8614 | 0.084 | 0.042 | 830.2 | 477.6 | 806.8 | 863.7 | 643.4 | 752.2 |
J065 | chr5 | 72865729 | 72872638 | TRUE | OK | 694.2 | 0.0242 | 0.3307 | 0.8011 | 0.195 | 0.097 | 828.2 | 359.7 | 748.4 | 857.8 | 606.2 | 764.8 |
J066 | chr5 | 72871889 | 72872638 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J067 | chr5 | 72872720 | 72875614 | TRUE | OK | 728.3 | 0.0141 | 0.6525 | 0.9052 | 0.043 | 0.022 | 861.8 | 436.9 | 844.1 | 800.2 | 661.0 | 765.7 |
J068 | chr5 | 72872720 | 72877227 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.0855 | 0.4774 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 2.0 | 1.0 | 1.0 |
J069 | chr5 | 72875737 | 72877227 | TRUE | OK | 717.9 | 0.00934 | 0.177 | 0.7476 | 0.192 | 0.096 | 792.8 | 440.0 | 771.5 | 776.4 | 701.2 | 825.7 |
J070 | chr5 | 72877346 | 72882466 | TRUE | OK | 738.8 | 0.00652 | 0.05428 | 0.6356 | 0.249 | 0.125 | 795.7 | 471.3 | 753.4 | 782.3 | 758.9 | 871.1 |
J071 | chr5 | 72882527 | 72883063 | TRUE | OK | 684.6 | 0.00518 | 0.1492 | 0.7343 | 0.164 | 0.082 | 768.1 | 459.8 | 702.0 | 711.8 | 690.4 | 775.4 |
J072 | chr5 | 72883232 | 72887069 | TRUE | OK | 980.1 | 0.00152 | 0.06813 | 0.6596 | 0.128 | 0.064 | 1075.7 | 718.4 | 1005.2 | 1082.1 | 953.8 | 1045.2 |
J073 | chr5 | 72887222 | 72888077 | TRUE | OK | 1021.1 | 0.00268 | 0.02254 | 0.5098 | 0.199 | 0.100 | 1116.2 | 704.9 | 1024.3 | 1137.7 | 1042.0 | 1101.2 |
J074 | chr5 | 72888303 | 72889785 | TRUE | OK | 903.5 | 0.00464 | 0.1291 | 0.7228 | 0.164 | 0.082 | 951.5 | 608.9 | 989.1 | 1018.6 | 881.4 | 971.7 |
J075 | chr5 | 72889957 | 72891809 | TRUE | OK | 756.8 | 0.011 | 0.08931 | 0.6885 | 0.266 | 0.133 | 912.1 | 460.9 | 683.9 | 855.8 | 750.1 | 877.9 |
J076 | chr5 | 72891896 | 72893138 | TRUE | OK | 788.8 | 0.00668 | 0.1797 | 0.7488 | 0.164 | 0.082 | 933.8 | 520.3 | 770.5 | 860.7 | 769.7 | 877.9 |
J077 | chr5 | 72893246 | 72893376 | TRUE | OK | 841.0 | 0.00181 | 0.01244 | 0.42 | 0.195 | 0.098 | 928.8 | 606.9 | 809.8 | 930.2 | 848.1 | 922.4 |
J078 | chr5 | 72893535 | 72893615 | TRUE | OK | 1049.1 | 0.00285 | 0.8081 | 0.9521 | 0.015 | 0.007 | 1240.4 | 807.1 | 1068.7 | 1161.6 | 943.0 | 1074.2 |
J079 | chr5 | 72893703 | 72896457 | TRUE | OK | 1108.1 | 0.00648 | 0.1167 | 0.7134 | 0.192 | 0.096 | 1292.7 | 727.8 | 1076.7 | 1286.7 | 1082.1 | 1182.4 |
J080 | chr5 | 72896556 | 72897055 | TRUE | OK | 1060.2 | 0.0071 | 0.02101 | 0.4993 | 0.305 | 0.152 | 1183.2 | 651.7 | 1010.2 | 1233.0 | 1089.0 | 1194.0 |
J081 | chr5 | 72897151 | 72900005 | TRUE | OK | 939.8 | 0.00297 | 0.04083 | 0.5966 | 0.187 | 0.094 | 1036.3 | 649.6 | 943.8 | 1042.4 | 934.2 | 1032.6 |
J082 | chr5 | 72900081 | 72900973 | TRUE | OK | 915.1 | 0.0018 | 0.5731 | 0.8792 | 0.039 | 0.020 | 1053.1 | 720.5 | 921.6 | 958.0 | 852.0 | 985.2 |
J083 | chr5 | 72901073 | 72903708 | TRUE | OK | 1025.7 | 0.00255 | 0.4454 | 0.838 | 0.071 | 0.036 | 1132.9 | 836.3 | 1020.3 | 1073.2 | 932.3 | 1159.2 |
J084 | chr5 | 72903783 | 72905302 | TRUE | OK | 1066.3 | 0.00316 | 0.2281 | 0.7684 | 0.117 | 0.059 | 1184.2 | 817.5 | 1057.6 | 1115.9 | 994.0 | 1228.8 |
J085 | chr5 | 72905445 | 72908708 | TRUE | OK | 680.9 | 0.00447 | 0.3709 | 0.8139 | 0.118 | 0.059 | 709.9 | 570.4 | 671.8 | 734.7 | 593.4 | 805.4 |
N086 | chr5 | 72896556 | 72900005 | TRUE | OK | 13.7 | 0.01 | 0.1317 | 0.7242 | 0.541 | 0.270 | 14.8 | 8.3 | 10.1 | 13.9 | 13.7 | 21.3 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000083312.17 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |