Normalized Counts Table (ENSG00000068745.15)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	Normalized Coverage Counts
binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (yes/no)	log2FCvst (yes/no)	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9	MCF10A-KI-BYL719-10	MCF10A-KI-BYL719-11	MCF10A-KI-BYL719-12
E001	chr3	48688002	48688773	TRUE	OK	877.8	0.0109	5.548e-08	7.397e-05	-1.015	-0.508	843.0	1252.3	886.4	707.9	764.8	812.1
E002	chr3	48689537	48689609	TRUE	OK	472.8	0.00218	4.145e-12	1.676e-08	-0.677	-0.339	437.8	599.6	459.3	368.3	492.6	479.6
E003	chr3	48689609	48689713	TRUE	OK	527.9	0.00211	8.504e-10	1.881e-06	-0.581	-0.291	512.7	602.7	503.6	441.8	570.9	535.6
E004	chr3	48691306	48691482	TRUE	OK	796.0	0.00528	4.65e-10	1.126e-06	-0.824	-0.412	794.7	968.7	821.9	670.1	751.1	769.6
E005	chr3	48692953	48693058	TRUE	OK	621.5	0.00849	1.236e-06	0.0009979	-0.803	-0.401	623.2	733.0	667.8	548.0	562.1	594.6
E006	chr3	48693058	48693067	TRUE	OK	412.5	0.00494	1.12e-07	0.0001339	-0.712	-0.356	412.2	478.6	431.1	354.4	388.8	409.9
E007	chr3	48693067	48693080	TRUE	OK	392.4	0.00562	1.446e-06	0.001136	-0.682	-0.341	387.5	441.1	419.0	337.5	364.3	405.1
E008	chr3	48693080	48693108	TRUE	OK	413.0	0.00488	1.352e-07	0.0001578	-0.701	-0.351	412.2	465.1	442.2	350.5	389.8	418.6
E009	chr3	48693108	48693120	TRUE	OK	350.1	0.00587	2.448e-05	0.01102	-0.615	-0.307	344.1	373.3	374.7	309.8	349.6	349.0
E010	chr3	48693120	48693122	TRUE	OK	328.1	0.00608	1.52e-05	0.007705	-0.643	-0.322	326.4	356.6	350.5	290.9	330.0	314.2
E011	chr3	48693122	48693179	TRUE	OK	386.4	0.00677	3.563e-06	0.002413	-0.711	-0.355	388.5	430.6	420.0	339.5	369.2	370.3
E012	chr3	48693179	48693269	TRUE	OK	63.7	0.00364	0.3775	0.816	-0.154	-0.077	57.2	63.6	50.4	53.6	76.4	81.2
E013	chr3	48693269	48693335	TRUE	OK	54.4	0.00648	0.2627	0.7798	-0.218	-0.109	54.2	48.0	47.3	38.7	64.6	73.5
E014	chr3	48693335	48693338	TRUE	OK	38.7	0.0153	0.2673	0.7813	-0.285	-0.143	44.4	34.4	30.2	23.8	48.0	51.2
E015	chr3	48693447	48693452	TRUE	OK	41.9	0.0117	0.0214	0.5024	-0.589	-0.295	54.2	40.7	36.3	31.8	42.1	46.4
E016	chr3	48693452	48693455	TRUE	OK	42.9	0.0161	0.08208	0.68	-0.476	-0.238	54.2	41.7	33.2	29.8	44.1	54.1
E017	chr3	48693455	48693487	TRUE	OK	57.2	0.0119	0.2681	0.7816	-0.257	-0.128	64.1	49.0	46.3	45.7	61.7	76.4
E018	chr3	48693487	48693520	TRUE	OK	72.7	0.0105	0.4149	0.8287	-0.166	-0.083	72.0	65.7	58.4	60.6	74.4	105.4
E019	chr3	48693520	48693784	TRUE	OK	413.2	0.00584	0.04103	0.5972	0.308	0.154	311.6	354.5	261.9	354.4	605.2	591.7
E020	chr3	48693784	48693952	TRUE	OK	576.8	0.00585	0.0005824	0.09736	0.497	0.248	400.3	460.9	345.5	516.3	895.1	843.1
E021	chr3	48693952	48693983	TRUE	OK	461.9	0.00392	1.279e-05	0.006743	0.530	0.265	312.6	373.3	262.9	451.7	681.6	689.4
E022	chr3	48693983	48694050	TRUE	OK	508.7	0.00319	6.998e-05	0.02424	0.442	0.221	351.0	427.5	307.2	489.4	734.5	742.5
E023	chr3	48694050	48694171	TRUE	OK	575.8	0.00244	1.436e-08	2.202e-05	0.559	0.279	351.0	478.6	345.5	579.8	872.5	827.6
E024	chr3	48694171	48694174	TRUE	OK	391.3	0.00364	1.183e-05	0.006341	0.512	0.256	246.5	332.6	228.6	429.9	566.0	544.3
E025	chr3	48694174	48694240	TRUE	OK	497.6	0.00333	4.634e-07	0.0004367	0.557	0.278	308.6	416.0	288.1	535.1	711.0	727.1
E026	chr3	48694240	48694344	TRUE	OK	311.4	0.00802	0.0006229	0.101	0.601	0.300	200.2	233.6	182.3	270.0	459.3	523.1
E027	chr3	48694344	48694458	TRUE	OK	224.7	0.0167	0.02626	0.5327	0.581	0.290	147.9	158.5	140.0	175.7	310.4	415.7
E028	chr3	48694458	48694525	TRUE	OK	296.7	0.0129	0.0001147	0.0342	0.831	0.416	174.5	178.3	175.3	282.0	404.4	565.6
E029	chr3	48694525	48694623	TRUE	OK	367.6	0.0175	0.0001848	0.04729	0.916	0.458	238.6	197.1	196.4	322.7	582.7	668.1
E030	chr3	48694623	48694693	TRUE	OK	429.7	0.00981	8.53e-06	0.00484	0.829	0.415	268.2	273.2	231.7	385.2	679.6	740.6
E031	chr3	48694693	48694701	TRUE	OK	398.7	0.0036	5.875e-08	7.806e-05	0.664	0.332	246.5	283.6	240.7	384.2	586.6	650.7
E032	chr3	48694701	48694770	TRUE	OK	555.6	0.00475	9.368e-10	2.037e-06	0.811	0.405	317.5	378.5	321.3	522.2	877.4	916.6
E033	chr3	48694770	48694824	TRUE	OK	497.6	0.00653	7.34e-07	0.0006502	0.765	0.382	290.9	337.8	297.1	446.8	788.3	824.7
E034	chr3	48694824	48694871	TRUE	OK	418.2	0.00872	3.783e-06	0.002522	0.825	0.412	232.7	266.9	253.8	365.3	714.9	675.8
E035	chr3	48694871	48695089	TRUE	OK	543.3	0.00977	1.985e-07	0.0002195	0.951	0.475	281.0	314.9	337.4	496.4	920.5	909.8
E036	chr3	48695089	48695127	TRUE	OK	769.2	0.00338	0.03148	0.5589	0.227	0.113	568.9	620.4	605.3	803.2	1021.4	995.8
E037	chr3	48695127	48695129	TRUE	OK	627.9	0.00361	0.07261	0.6667	0.199	0.100	480.2	500.5	495.6	647.3	841.2	802.5
E038	chr3	48695129	48695168	TRUE	OK	837.2	0.00508	0.0955	0.6944	0.206	0.103	643.9	662.1	663.8	877.6	1115.4	1060.6
E039	chr3	48695168	48695418	TRUE	OK	1331.8	0.00683	0.1552	0.7369	0.202	0.101	1025.4	1032.3	1104.9	1337.3	1797.0	1693.9
E040	chr3	48695418	48695421	TRUE	OK	373.8	0.00846	0.06724	0.6585	0.305	0.152	304.7	255.5	279.0	385.2	509.2	509.5
E041	chr3	48695421	48695558	TRUE	OK	94.8	0.00499	5.057e-20	7.74e-16	1.743	0.871	37.5	34.4	31.2	117.1	192.9	155.7
E042	chr3	48695558	48695582	FALSE	LOW_COUNTS_INDEP_FILTER	5.3	0.0514	0.01337	NA	NA	NA	4.9	6.3	11.1	5.0	2.0	2.9
E043	chr3	48695582	48695588	FALSE	LOW_COUNTS_INDEP_FILTER	4.5	0.141	0.05508	NA	NA	NA	3.0	5.2	11.1	5.0	1.0	1.9
E044	chr3	48699361	48699788	TRUE	OK	14.1	0.0139	0.3844	0.8185	-0.337	-0.169	8.9	17.7	14.1	15.9	14.7	13.5
E045	chr3	48708119	48708237	TRUE	OK	23.7	0.00898	0.1926	0.7547	-0.365	-0.183	23.7	18.8	26.2	16.9	29.4	27.1
E046	chr3	48711366	48711459	TRUE	OK	9.9	0.0303	0.4097	0.8271	0.389	0.195	6.9	7.3	7.1	15.9	8.8	13.5
E047	chr3	48715314	48715388	TRUE	OK	37.7	0.00554	0.04043	0.5952	-0.471	-0.235	38.5	43.8	31.2	32.8	42.1	37.7
E048	chr3	48715388	48715417	TRUE	OK	49.9	0.00513	0.2389	0.7717	-0.249	-0.124	42.4	57.3	39.3	48.6	59.7	52.2
E049	chr3	48715417	48715527	TRUE	OK	51.0	0.00591	0.1036	0.7014	-0.349	-0.175	47.3	58.4	41.3	50.6	58.8	49.3
E050	chr3	48715527	48715529	FALSE	LOW_COUNTS_INDEP_FILTER	4.8	0.0759	0.531	NA	NA	NA	1.0	4.2	5.0	8.9	3.9	5.8
E051	chr3	48716431	48716477	FALSE	LOW_COUNTS_INDEP_FILTER	7.9	0.138	0.4957	NA	NA	NA	11.8	2.1	3.0	12.9	9.8	7.7
E052	chr3	48717057	48717156	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.0673	0.5498	NA	NA	NA	3.0	1.0	4.0	3.0	1.0	3.9
E053	chr3	48717156	48717166	TRUE	OK	433.8	0.0151	0.4893	0.8525	-0.158	-0.079	427.9	336.8	395.8	425.9	486.7	529.8
E054	chr3	48717166	48717188	TRUE	OK	408.8	0.0145	0.4915	0.8531	-0.153	-0.077	403.3	319.1	369.7	397.1	455.4	508.6
E055	chr3	48717188	48717192	TRUE	OK	258.9	0.0164	0.4153	0.8288	-0.198	-0.099	275.1	205.4	223.6	253.2	280.1	316.2
E056	chr3	48717192	48717193	TRUE	OK	178.2	0.0156	0.5001	0.8557	-0.160	-0.080	185.4	149.1	144.0	175.7	181.2	234.0
E057	chr3	48717193	48717203	TRUE	OK	175.0	0.0145	0.4733	0.8472	-0.165	-0.082	180.4	149.1	141.0	172.7	178.2	228.2
E058	chr3	48717203	48717206	TRUE	OK	14.3	0.0129	0.1702	0.7443	-0.506	-0.253	16.8	16.7	10.1	13.9	13.7	14.5
E059	chr3	48717206	48717210	TRUE	OK	10.3	0.0235	0.2731	0.783	-0.506	-0.253	13.8	12.5	5.0	9.9	9.8	10.6
E060	chr3	48717210	48717214	FALSE	LOW_COUNTS_INDEP_FILTER	6.5	0.0682	0.278	NA	NA	NA	8.9	9.4	3.0	7.9	2.9	6.8
E061	chr3	48717214	48717215	FALSE	LOW_COUNTS_INDEP_FILTER	5.5	0.0645	0.1638	NA	NA	NA	8.9	7.3	3.0	6.0	2.0	5.8
E062	chr3	48717215	48717216	FALSE	LOW_COUNTS_INDEP_FILTER	4.3	0.0621	0.1888	NA	NA	NA	7.9	5.2	2.0	4.0	2.0	4.8
E063	chr3	48717216	48717221	FALSE	LOW_COUNTS_INDEP_FILTER	4.3	0.0621	0.1888	NA	NA	NA	7.9	5.2	2.0	4.0	2.0	4.8
E064	chr3	48717221	48717249	FALSE	LOW_COUNTS_INDEP_FILTER	3.6	0.0511	0.4925	NA	NA	NA	5.9	3.1	2.0	4.0	2.0	4.8
E065	chr3	48717249	48717278	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.103	0.451	NA	NA	NA	2.0	1.0	1.0	1.0	1.0	1.0
E066	chr3	48717278	48717487	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.223	0.2443	NA	NA	NA	2.0	1.0	0.0	1.0	0.0	0.0
E067	chr3	48717869	48717889	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E068	chr3	48718647	48718757	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E069	chr3	48729654	48729777	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E070	chr3	48738881	48738966	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E071	chr3	48739586	48739746	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E072	chr3	48740205	48740353	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.865	0.7519	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J073	chr3	48688773	48689537	TRUE	OK	308.6	0.00269	2.017e-12	8.674e-09	-0.786	-0.393	311.6	403.5	301.2	228.3	284.0	322.9
J074	chr3	48689713	48691306	TRUE	OK	378.1	0.00217	1.585e-07	0.0001806	-0.531	-0.265	358.9	427.5	361.6	328.6	387.8	404.1
J075	chr3	48691482	48692953	TRUE	OK	434.8	0.0102	3.899e-07	0.0003836	-0.928	-0.464	456.5	552.6	471.4	377.3	363.3	387.7
J076	chr3	48693179	48693269	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.299	0.9947	NA	NA	NA	0.0	2.1	2.0	0.0	1.0	5.8
J077	chr3	48693179	48695089	TRUE	OK	212.4	0.00556	5.786e-07	0.0005348	-0.763	-0.381	199.2	266.9	231.7	183.7	202.7	190.5
J078	chr3	48693338	48695089	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.268	0.8043	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	1.0
J079	chr3	48694240	48694458	TRUE	OK	26.5	0.0183	0.01797	0.4754	0.778	0.389	14.8	12.5	20.1	39.7	35.3	36.7
J080	chr3	48694240	48694693	TRUE	OK	62.0	0.0279	0.3396	0.8039	0.291	0.146	33.5	55.3	50.4	80.4	57.8	94.7
J081	chr3	48694240	48694701	FALSE	LOW_COUNTS_INDEP_FILTER	6.7	0.0146	0.005906	NA	NA	NA	2.0	4.2	2.0	9.9	11.8	10.6
J082	chr3	48694240	48695089	TRUE	OK	76.1	0.0167	0.04828	0.621	0.497	0.249	56.2	58.4	41.3	101.3	114.6	85.1
J083	chr3	48694525	48695089	TRUE	OK	14.3	0.0533	0.1483	0.734	0.731	0.365	11.8	5.2	9.1	23.8	13.7	22.2
J084	chr3	48694824	48695089	TRUE	OK	45.0	0.0137	0.1419	0.731	0.371	0.185	29.6	41.7	26.2	60.6	52.9	59.0
J085	chr3	48695418	48695558	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.56	0.7253	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J086	chr3	48695418	48708119	FALSE	LOW_COUNTS_INDEP_FILTER	8.6	0.0585	0.3472	NA	NA	NA	5.9	6.3	14.1	3.0	12.7	9.7
J087	chr3	48695418	48711366	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0535	0.3695	NA	NA	NA	2.0	0.0	1.0	3.0	2.9	1.9
J088	chr3	48695418	48715314	TRUE	OK	12.6	0.00875	0.1082	0.7056	-0.583	-0.291	12.8	14.6	12.1	8.9	16.6	10.6
J089	chr3	48695418	48715388	FALSE	LOW_COUNTS_INDEP_FILTER	6.4	0.0539	0.4491	NA	NA	NA	2.0	3.1	8.1	4.0	12.7	8.7
J090	chr3	48695418	48717156	TRUE	OK	131.0	0.0146	0.3458	0.8058	-0.224	-0.112	134.1	99.1	126.9	126.1	145.9	153.7
J091	chr3	48695421	48708119	FALSE	LOW_COUNTS_INDEP_FILTER	8.6	0.0141	0.372	NA	NA	NA	8.9	8.3	8.1	7.9	12.7	5.8
J092	chr3	48695421	48711366	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.108	0.9717	NA	NA	NA	0.0	1.0	1.0	0.0	2.0	1.0
J093	chr3	48695421	48715314	FALSE	LOW_COUNTS_INDEP_FILTER	6.0	0.0169	0.2044	NA	NA	NA	5.9	6.3	7.1	5.0	7.8	3.9
J094	chr3	48695421	48715388	FALSE	LOW_COUNTS_INDEP_FILTER	6.3	0.0167	0.8218	NA	NA	NA	3.9	8.3	3.0	6.9	7.8	7.7
J095	chr3	48695421	48717057	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J096	chr3	48695421	48717156	TRUE	OK	260.6	0.0141	0.6296	0.8975	-0.110	-0.055	252.4	197.1	236.7	254.2	291.8	331.6
J097	chr3	48699788	48717156	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0705	0.3712	NA	NA	NA	1.0	1.0	0.0	2.0	2.9	1.0
J098	chr3	48708237	48711366	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.0391	0.3546	NA	NA	NA	1.0	2.1	2.0	4.0	2.0	5.8
J099	chr3	48708237	48717156	FALSE	LOW_COUNTS_INDEP_FILTER	9.6	0.0109	0.6499	NA	NA	NA	6.9	8.3	7.1	6.9	15.7	12.6
J100	chr3	48711459	48717156	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.161	0.7267	NA	NA	NA	0.0	1.0	1.0	0.0	0.0	1.9
J101	chr3	48715527	48716431	FALSE	LOW_COUNTS_INDEP_FILTER	3.3	0.618	0.526	NA	NA	NA	7.9	0.0	0.0	6.9	2.0	2.9
J102	chr3	48715527	48717156	TRUE	OK	24.1	0.00552	0.1785	0.7483	-0.368	-0.184	22.7	26.1	21.2	24.8	25.5	24.2
J103	chr3	48716477	48717156	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.611	0.5675	NA	NA	NA	4.9	0.0	0.0	6.9	1.0	1.9
J104	chr3	48717487	48717869	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J105	chr3	48717889	48718647	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J106	chr3	48718757	48729654	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J107	chr3	48729777	48738881	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J108	chr3	48738966	48739586	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J109	chr3	48739746	48740205	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000068745.15
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE